Priour to changing anything in the original program,I highly recommend you save it with a NEW file name. This way you always have the original one to refer to. I made individual file folers for the original programs and one for the converted ones.
If you have any analog in the C200 it will use different memory addresses in the CJ/CS. The addresses are in the CJ/CS manual. Additionally, if you have any remote I/O the addresses change from 50.xx to 3000.xx. I found by opening project work space, click on symbols and you can globally change a 50.00 to 3000.00 easily enough. This is also a good place to edit descriptions for the address too.
Every other instruction converted with out issue. The original project was done in syswin. I did the original covert to CS with CX-P ver 3 so if you have a higher version, like CX-ONE, you will find things should be straigt forward.