I, too, did the sneakernet thing at my last job to keep 4 roll-around maintenance PCs sychronized with the my office and network backups, although I was able to get them to buy me a USB memory stick which is much more useful and faster than a floppy. I had a practice which helped out:
What I did (using the database export and MSExcel) was to put something in all or some the available address descriptions. Like the word SPARE for example. Then, when making changes, instead of changing the comment of an existing address, try to use a new one and change it's name from SPARE to your new usage. I would also try to plan future changes and get all the address comments taken care of ahead of time as much as possible.
Then, if you go online from the other PC with an outdated copy of the logic and see the word SPARE in some logic on the screen, at least you'll know you don't have the latest and greatest copy.
Ideally though, you should try to network them. If you can network the two PCs, then always open the "master" or main copy of the logic.rss file when you go online from either PC. Do this by setting both PCs default RSLogix file search path to the same shared location.
To change the default paths, go to the main menu "Tools" > "Options..." > and look at the "System Options" dialog box on the "System Preferences" tab toward the bottom you'll see Project Files Search Path.
That's where you change the default location that RSLogix looks for files when opening one or going online.
I normally leave the secondary save path alone so that if I am not connected to the main source path (network location or on the other PC in your case) for whatever reason, RSLogix still has a place to look locally.
Then, anytime changes are made, you can copy the saved file to the secondary PC as a form of back-up using windows explorer. In a case where one PC dies, you still have a good copy on the other one.
Another thing that will crop up when you get two computers using the same shared rslogix file is that the RSLinx drivers need to have the same names. If the drivers are given different names in each PC, then you will get an error when you open the file first and hit the "Go Online" button. The system communication path is saved with the ladder program and contains the driver name from the PC that last saved the logic.
Hope this helps,
Paul