The first place to start, is on the module property pages, the "Channel Configuration". Standard Logix 5000 analog input modules have both notch filtering, and digital low pass filtering on a per channel basis.
Second, you can use the old standby in logic:
Filt = (Unfilt - Filt)/Constant + Filt
where Constant can run from 5 to 100 or so, trigger that every 100ms or so.
Third, you can probably filter the value on the drive output.
But, do you really want it filtered? Is the signal actually that variant? I generally like to datalog and trend unfiltered, but display a filtered value for the operators.