... the only benefit I see to NPN over PNP is the current capability. NPN transistor output can sink more current than a PNP transistor can source. In electronics ... "negative" logic is often used. ie. - to illuminate a LED ... you switch the ground connection on and off and leave the positive connected to the LED via your current limiting resistor. This example, however, is typically on a pc board and it only lights a LED. For a control system, wired though cabling and conduits, I see the dagerous implications. Maybe it's a carry-over from the electronics industry.
Just my 2 cents.
- Tony