That makes sense; the HMI conversion for timebases is a very common issue when converting PLC/SLC programs to Logix.
In my experience you have to address this, and other HMI addressing issues, manually.
The ControlLogix Timer has a 32-bit DINT datatypes for the Preset, Accumulated, and Control words, versus 16-bit for the PLC/SLC, and the Timer contro elements cannot be emulated directly using the "Map PLC/SLC Data Tables" feature like an INT or REAL data element can.
Therefore you're going to have to re-address any HMI reference that directly addresses a timer (or a Counter, for that matter), so you'll handle the scaling at that point too.