A few ideas:
1) It is possible noise is coming into the machine from outside? Do you have a filter installed at the mains?
2) Do you have more than one identical drive? Are they all faulting? If not, then try swapping drives.
3) If there is real noise, you should be able to observe the failure by using RSLogix5000 to trend the position value of the servo axis. You can set up the trend to record a fixed amount of data continuously until a trigger, where it will stop. Later you can go see the results.
4) You have incremental/absolute/stegman encoders? If you used a different type perhaps the problem will go away? You might get AB to lend you a motor and cable for that.
5) This last idea is going to sound impossible. I never would have believed, but this really happened with four of our systems. We built some machines where a couple of pulleys were being rotated by timing belts at around 600rpm. An AB 845GM absolute encoder coupled to the shaft is used to trigger a Kinetix 350 with an MPL servo. Occasionally, as often as 5 minutes, and as long as two weeks, the servo would miss a trigger. We troubleshot for months, believing that the 845GM encoder was at fault. After all, the trends clearly showed that the outputs of the encoder would periodically drop out, or stick at a single value for 30-40ms at a time. Mysteriously, the problem only occurred in our shop, and never at the customer plant, where they were running five other identical systems. The problem was ultimately traced to static electricity built up on the belts, and pulleys, periodically discharging across the face of the encoder's chrome plated disk, interrupting the encoder feedback. It seems that when the shaft is turning, the shaft and ball bearings begin to "float" on a thin film of grease, disconnecting the assembly from the ground provided by the outer race of the bearings. We figured that out by measuring continuity while the system was running. The belt flex generated a field which accumulated until the discharge. The clue was the low humidity in our shop during February. We purchased a conductive brush (McMaster Carr) and installed it against the shaft to discharge the field. Our mystery problem disappeared. So, if you have something that could create a static field (a non-conductor or two) and maybe get more complaints in the winter, then you might have a static discharge. A conductive brush on a shaft surface or a spring-loaded ball at the end of the shaft are the two solutions I found that are commonly used for solving static-related motor bearing failure.
Hope this helps!