The reason I asked you (twice now) to give the motor one revolution and then compare that to the contents of I:2.1 divided by the scale factor is so that you can know if you have the correct scale factor. So please do the test. Do you understand the point of this?
So with a little more detail:
1) Read the value (contents) of I:2.1 and write it down. This is the initial count
2) Move the motor one revolution. Do this by hand, do not run it electrically unless you can move one and only one revolution.
3) Read the new value of I:2.1 and write it down. This is the final count.
4) Subtract the final count from the initial count and divide by your scale factor. i.e.:
{(final count) - (initial count)} / (scale factor)
This value should be the same number of "tr" that you physically moved the motor. If it is, great! You can move on to velocity. If not, then you need to get your scale factor correctly calculated before you move on to velocity.
If not, then I suspect you need to understand how you are using your encoder: quadrature (4x), or 2x, or 1x. You also need to understand the mechanical linkage between the encoder and the motor and the device that is driven. Let's say you are actually configured for quadrature. This means you have 4 counts per pulse (of the encoder). You still have 1250 pulses per revolution and 1 revolution has 6.28 radians (or tr?). Then your scale factor would be:
[4 counts / pulse] * [1250 pulse / revolution] * [1 revolution / 6.28 radians] = 796.178 counts/radian
Do you understand the difference between the two scale factors that we have calculated?
Oh, I do not understand the point of your text in red. If it is a question, then the answer is yes.